PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G354900.1
Common NameB456_009G354900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 224aa    MW: 25726.5 Da    PI: 9.0939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G354900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.3e-52111351128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lp+GfrFhP+deelv++yL +kv+ ++  +++ + evd++k+ePwd+p++++ ++kewyf+s+rd+kyatg r+nrat+sgyWkatgkdk+
  Gorai.009G354900.1  11 LPAGFRFHPRDEELVCDYLMRKVALTD--TFQLMIEVDLNKCEPWDIPETARVNSKEWYFYSQRDRKYATGLRTNRATTSGYWKATGKDKA 99 
                         799********************9988..346799*************88888999*********************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s kg+ vg++ktLvfy+grapkg+k+dWvmhe+rl
  Gorai.009G354900.1 100 VHS-KGTIVGMRKTLVFYHGRAPKGTKSDWVMHEFRL 135
                         ***.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-583156IPR003441NAC domain
PROSITE profilePS5100555.17411156IPR003441NAC domain
PfamPF023656.5E-2712135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSNIRLVEAK LPAGFRFHPR DEELVCDYLM RKVALTDTFQ LMIEVDLNKC EPWDIPETAR  60
VNSKEWYFYS QRDRKYATGL RTNRATTSGY WKATGKDKAV HSKGTIVGMR KTLVFYHGRA  120
PKGTKSDWVM HEFRLQPTSN VSTLKEDWVL CRMLHKTKEI SKNPSIMGSS YDDIGSSPLP  180
PLMDSFISFH QPNLDDKYEQ QVPDSPICPQ TKGTLFSPIW TQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-54616212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-54616212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-54616212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-54616212171NO APICAL MERISTEM PROTEIN
3swm_A1e-54616215174NAC domain-containing protein 19
3swm_B1e-54616215174NAC domain-containing protein 19
3swm_C1e-54616215174NAC domain-containing protein 19
3swm_D1e-54616215174NAC domain-containing protein 19
3swp_A1e-54616215174NAC domain-containing protein 19
3swp_B1e-54616215174NAC domain-containing protein 19
3swp_C1e-54616215174NAC domain-containing protein 19
3swp_D1e-54616215174NAC domain-containing protein 19
4dul_A1e-54616212171NAC domain-containing protein 19
4dul_B1e-54616212171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441072.11e-155PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 21/22
SwissprotQ84TE62e-87NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D2QTK31e-168A0A0D2QTK3_GOSRA; Uncharacterized protein
STRINGGorai.009G354900.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.27e-90NAC domain containing protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]