PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G304600.1
Common NameB456_009G304600, LOC105771215
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 421aa    MW: 48580.4 Da    PI: 6.3472
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G304600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.71.9e-29104189187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Gorai.009G304600.1 104 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMaEEYGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFKQLEA 189
                         8*************************************7788****************************97..66678*******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.84197162IPR017877Myb-like domain
PfamPF138378.7E-21103190No hitNo description
CDDcd122033.96E-20103169No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEMGDQYGLP DFQRLLTRRT HFPASLLPQP SESPYLAHHR NMAPSPPPYH EPPYVLSNGD  60
IAMPSGLLRF NTTGATGFTA EASASAAVGG GGWSLGNIDC GNSRWPRQET LTLLEIRSRL  120
DSKFKEANQK GPLWDEVSRI MAEEYGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKN  180
YRFFKQLEAI YGETSNQSSV PETNNINTVP SNLPEKYHES MQEQKMSESL GFSDPEFEAS  240
SSEKMNDDEC ELSGIASMVN QMGVKKGWKT KVKDFVDSQM KRLIDSQDVW MERMLKVIEE  300
KEKERVLREE EWRRQEAARF DKEHELWVKE RAWIEARDAS LMAALRTLRP LTAKTQNEIN  360
ANRWTEHEIL ERRLQENGYS TRQSTWEDIE AKMVNLGYGY EHEANNAECY KKRKEDYLSS  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3950751e-119GQ395075.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2098 SSR marker DPL0591 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448079.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A0D2TUB60.0A0A0D2TUB6_GOSRA; Uncharacterized protein
STRINGGorai.009G304600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-79Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]