PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G285000.2
Common NameB456_009G285000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 268aa    MW: 29489.1 Da    PI: 9.4269
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G285000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.81.1e-08167212550
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                         kr++r   NR +A rs +RK  ++ eLe+kv++L++e + L  ++ 
  Gorai.009G285000.2 167 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQVT 212
                         9************************************999987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-15163227IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.921165228IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.4E-11167219No hitNo description
SuperFamilySSF579597.03E-11167219No hitNo description
PfamPF001709.6E-8167212IPR004827Basic-leucine zipper domain
CDDcd147038.73E-23168217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007231Biological Processosmosensory signaling pathway
GO:0008272Biological Processsulfate transport
GO:0009294Biological ProcessDNA mediated transformation
GO:0009652Biological Processthigmotropism
GO:0009970Biological Processcellular response to sulfate starvation
GO:0045596Biological Processnegative regulation of cell differentiation
GO:0051170Biological Processnuclear import
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0051019Molecular Functionmitogen-activated protein kinase binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDKIPPRGVH HRRAHSDTTF RFDDLLLFDP SDLDLSSLDL PASSSNPTPP PVVPVPIYSS  60
DDSSSNGHHP RSSHSNPRQI SSHLRSLSVD SDFFDGLGLT GPAISGGAGD EKFGGKGAAG  120
EKRVHHRNSN SMDGTASFEV ESLMAVDGVK KAIAPDRLAE LALIDPKRAK RILANRQSAA  180
RSKERKIRYT SELERKVQTL QTEATNLSAQ VTVLQRDTTG LTTENKELKL RLQAMEQQAQ  240
LRDGNMRTFS LCLHYILQLY RWWPGAL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00184DAPTransfer from AT1G43700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446799.11e-175PREDICTED: transcription factor VIP1-like
SwissprotQ9MA754e-72VIP1_ARATH; Transcription factor VIP1
TrEMBLA0A0D2QPU60.0A0A0D2QPU6_G
STRINGPOPTR_0005s21300.17e-95(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.13e-58VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]