PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G279200.1
Common NameB456_009G279200, LOC105770829
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 283aa    MW: 30616.9 Da    PI: 7.827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G279200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16205241135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg+
  Gorai.009G279200.1 205 CTHCGISSnsTPMMRRGPSGPRSLCNACGLFWANKGT 241
                         *****99999************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-875110IPR010399Tify domain
PROSITE profilePS5132012.4875110IPR010399Tify domain
PfamPF062003.4E-979109IPR010399Tify domain
PROSITE profilePS5101712.471141183IPR010402CCT domain
PfamPF062036.1E-16141183IPR010402CCT domain
PROSITE profilePS5011410.646199260IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-15199252IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-12203252No hitNo description
CDDcd002023.61E-14204251No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15204245IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440205232IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14205241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MYGQSQPMNV PAPVTSSGVD VRDDVSASAS VDNHQNVSYD AHPLNNGVGV EGVHTDPIYA  60
TAEAASAADL AIVQRVDDAS QLTLSFRGQV YVFDAITPNK FHAVLLLLGG CELTSGPHGV  120
EMSSQNLRSG VDFPRSNQPH RAASLDRFRQ KRKERCFDKK VRYGVRQEVA LRMQRNKGQF  180
TSSKKSDRTD SCSTQDNDNL PDSSCTHCGI SSNSTPMMRR GPSGPRSLCN ACGLFWANKG  240
TLRDLPKKTR DHSVPPVEHR DSEANDSDSG TAIPTQSNIV SV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447633.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH66e-75GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0D2TSS40.0A0A0D2TSS4_G
STRINGGLYMA02G37980.21e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-75GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]