PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G233500.1
Common NameB456_009G233500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 281aa    MW: 31137.6 Da    PI: 8.9796
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G233500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57370.73e-22126208298
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         lfqrl+se+Dei+lL+ ++ + ak+g++p +d+++fy+fvkk i+++             KkKfk++  k ++g++ +fsk+h+q++fels
  Gorai.009G233500.1 126 LFQRLFSEDDEIALLKSMLAYSAKKGADPCADMNGFYDFVKKLIHID-------------KKKFKNNAGK-DKGEDRTFSKAHEQNAFELS 202
                         69*******************************************98.............9*********.9******************* PP

              DUF573  93 kkiWgs 98 
                         k iWg+
  Gorai.009G233500.1 203 KNIWGK 208
                         ****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-10127172IPR007592Protein of unknown function DUF573
PfamPF045047.3E-7173207IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
EVTSSEEEEG SSTEEDDEED PKTQSTPLIQ KSRPTRKPDS ESESDTAVPI IKPIAIATKP  60
MKGILSAKKC RSSKPLASLV RASSSKRAGE FAKEKRPKKK VRKEGLAIAP VVEEVKKTGE  120
DAKKLLFQRL FSEDDEIALL KSMLAYSAKK GADPCADMNG FYDFVKKLIH IDKKKFKNNA  180
GKDKGEDRTF SKAHEQNAFE LSKNIWGKEG ISGKVESSTD KKIDELSKSF NSLLDKKFGV  240
FDMEVEVVEV GLDMVDGEKK TALEAKWRKL QMVQLAGFVE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102KRPKKKVRK
295101RPKKKVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7512652e-71JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453830.11e-112PREDICTED: mediator-associated protein 1-like isoform X2
TrEMBLA0A0D2TPU40.0A0A0D2TPU4_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.15e-16DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]