PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G199300.1
Common NameB456_009G199300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 196aa    MW: 22678.4 Da    PI: 7.5956
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G199300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.33.3e-1365121561
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                         ++ +rk++NRe+ArrsR RK++ ++eL   v++L++ N +  + ++  + ++ + ++
  Gorai.009G199300.1  65 RKRKRKESNRESARRSRMRKQQHLDELVAQVAQLSKDNNQILNSINFTTHHYLNIQA 121
                         6789**********************************9998888777766666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-1157109No hitNo description
SMARTSM003381.6E-1861125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.71463126IPR004827Basic-leucine zipper domain
PfamPF001707.2E-1065114IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-1265117No hitNo description
CDDcd147023.10E-1966116No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSPVVSEILR SGFMINSSLR RRTHLVQSFS VVFLYCGNSN SSSSSQLQNS GSEEDLHQQN  60
MMDQRKRKRK ESNRESARRS RMRKQQHLDE LVAQVAQLSK DNNQILNSIN FTTHHYLNIQ  120
AENSVLRAQM MELSQRLDYL NQILSYLNTM SASELVYETD QCFETSTCDH GFTNPFNLPY  180
LNQPIMASPD MFQYY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469RKRKRK
26470RKRKRKE
37784RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5251512e-49HQ525151.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IYAS8 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444846.11e-115PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0D2S4P81e-143A0A0D2S4P8_G
STRINGPOPTR_0005s25290.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-30basic leucine-zipper 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]