PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G150000.1
Common NameB456_009G150000, LOC105769437
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 350aa    MW: 38920.2 Da    PI: 9.2057
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G150000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.33.5e-1723102273
            trihelix   2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                         Wt +e+++Liea++ ++er          rgk  + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++
  Gorai.009G150000.1  23 WTVNETMVLIEAKKMDDERRMkrsgdiegRGKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRIAE 102
                         *************977666662222222224799**************************************99988644 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.121587IPR017877Myb-like domain
PfamPF138372.0E-132298No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKLVMADQGG DNIVTREYRK GNWTVNETMV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW  60
KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRI AERGEGTHSN EGSSYWEMEK  120
NERKVKNLPS NMLRLIYERL EEVVEKKGDQ TAVAAGGSGL IPNIPYVMDR PITSVETSLP  180
PLLQHQLLAP IPAAIPLTLP APPQLPPPPI AAAAAAPLVQ PSPLSYAQPL PTVDSDTSEY  240
SDTPAKRRKR GTGNGEGSSG GTASANNSNE VGTAISKSAS IIAEAIQASE EREERRHKDL  300
VSLHERRLKM EESKTEMDKR GLDGLVDAIN KLANSILALA THKKQSAPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445521.10.0PREDICTED: uncharacterized protein LOC105769437 isoform X1
TrEMBLA0A0D2QGI70.0A0A0D2QGI7_GOSRA; Uncharacterized protein
STRINGGorai.009G150000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-60Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]