PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G143800.8
Common NameB456_009G143800, LOC105769266
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 326aa    MW: 35623.8 Da    PI: 9.4883
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G143800.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.92.5e-31171226258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpy+heSRh hA++R+RgsgG+F
  Gorai.009G143800.8 171 EPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKVRKPYMHESRHLHAIKRARGSGGQF 226
                         8****************************.*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-35168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.263169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.8E-26171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-23172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.7E-23203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCTYVVGCSS LGNSTESQVQ QSSISESLTL KMGVLPQHFH NNEQLSFQFQ DQDSSSTQST  60
GQSYPEVASA KDRNLYGQTL TSASSGGNGT HGKLVGNHAK LAYVTGTQDH VFPPSQGYRK  120
PIVHIPHHYA NPYLGSVAAT AYGSQAMIHH AHMMAMLPAR VPLPLDLKEG EPIYVNAKQY  180
HAILRRRQYR AKLEAQNKLI KVRKPYMHES RHLHAIKRAR GSGGQFLNTK KLQSKSTPTS  240
HGPDMSRSPQ LHLSANISVT DVHQPENFKD SGSANSCSDV TSASNSDEIF QQPDFRFYGY  300
PSCHTGEAMP GHAGHILLSS NSRAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20171234366NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445239.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLA0A0D2TQ030.0A0A0D2TQ03_GOSRA; Uncharacterized protein
STRINGGorai.009G143800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-59nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]