PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G143800.4
Common NameB456_009G143800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 212aa    MW: 23540.7 Da    PI: 10.157
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G143800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.91.2e-3157112258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpy+heSRh hA++R+RgsgG+F
  Gorai.009G143800.4  57 EPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKVRKPYMHESRHLHAIKRARGSGGQF 112
                         8****************************.*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-3554115IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.26355115IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-2657112IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-235880IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068606080IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.0E-2389112IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSFLLHKVHI PHHYANPYLG SVAATAYGSQ AMQIHHAHMM AMLPARVPLP LDLKEGEPIY  60
VNAKQYHAIL RRRQYRAKLE AQNKLIKVRK PYMHESRHLH AIKRARGSGG QFLNTKKLQS  120
KSTPTSHGPD MSRSPQLHLS ANISVTDVHQ PENFKDSGSA NSCSDVTSAS NSDEIFQQPD  180
FRFYGYPSCH TGEAMPGHAG HILLSSNSRA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2057120366NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445237.11e-151PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_012445238.11e-151PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
SwissprotQ93ZH24e-54NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D2TPZ81e-156A0A0D2TPZ8_GOSRA; Uncharacterized protein
STRINGGorai.009G143800.11e-150(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-52nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]