PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G133300.1
Common NameB456_009G133300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 377aa    MW: 43507.1 Da    PI: 4.7355
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G133300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.74.7e-16162246286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++e+ +L++a   +  + +r++l+   W+ev++k+++  + er+ +qC+++++ l+k+ykk+k++  + ts ++s+++yf++++
  Gorai.009G133300.1 162 WTEHETFVLLDAWGGRFLQRGRKSLQSEEWQEVAEKVSKVSMiERTDTQCRNRLDTLKKKYKKEKAMLAE-TSATTSKWVYFKKVD 246
                         *************************************777666**************************9.578888******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-20161246No hitNo description
Gene3DG3DSA:1.10.10.601.7E-4162226IPR009057Homeodomain-like
PROSITE profilePS500906.121162219IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVLMDDIEDD ARYPPNQYGV SHQRCYGSLS RRKLPVRNFP YSRSMGNQDV NVDDEVEDEE  60
DFRGEAKNFE QNNVVWYIGK NMDNEDDDEL DDGEDDDDDG SDKPKGYNEN SNDVDLERHP  120
KKRKLKNLLL SYEFAPRVPA PAVAASSMPK PSHGGRNSLT DWTEHETFVL LDAWGGRFLQ  180
RGRKSLQSEE WQEVAEKVSK VSMIERTDTQ CRNRLDTLKK KYKKEKAMLA ETSATTSKWV  240
YFKKVDMSST ARWAYSNCAN GMDKMRDSPA DSESADSDED ISDGQPPKKR RFGRQYDEGS  300
SFRMLADSIH KFSNIYEKIE NSKRHQMLEL EKMRMEIHME LEMQKRRIME NAQAEIVKIQ  360
QGDEEDNDVS IENASG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298577.11e-173trihelix transcription factor ASIL2-like
TrEMBLA0A0D2QF630.0A0A0D2QF63_GOSRA; Uncharacterized protein
STRINGGorai.009G133300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2818033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-39Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]