PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G107900.1
Common NameB456_009G107900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 235aa    MW: 25748.4 Da    PI: 10.6791
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G107900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.1e-19153186134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  Gorai.009G107900.1 153 CTHCEVTETPQWREGPMGPKTLCNACGVRYRSGR 186
                         *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-17147197IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.477151183IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14152184IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.03E-14152199No hitNo description
SuperFamilySSF577164.75E-15152210No hitNo description
PfamPF003202.4E-17153186IPR000679Zinc finger, GATA-type
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MFNTRVCDGS SQLNQLSSTT SITPHSDCTD VKGSTWFQTS SPVSVLESSS PCSAANPTPI  60
DPKLSFLVKK RGRSKRRPAS TFNQQFIFSS ISSTSSASRG TNYVVGSESE SENNPTEKPA  120
KKRQKKKKNL TLLSGCNETK KPPSLQPIVI MKCTHCEVTE TPQWREGPMG PKTLCNACGV  180
RYRSGRLFPE YRPAASPTFV ASMHSNSHKK VVEMRKKAKL PLSLSSIPPK MSFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443598.11e-165PREDICTED: GATA transcription factor 11-like
TrEMBLA0A0D2TN361e-172A0A0D2TN36_G
STRINGPGSC0003DMT4000208768e-53(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-37GATA transcription factor 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]