PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G086200.4
Common NameB456_009G086200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 336aa    MW: 37845 Da    PI: 7.433
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G086200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-112765240
                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40
                        ++ k  rr+++NReAAr+sR+RKka++++Le    +L +
  Gorai.009G086200.4 27 PDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLAQ 65
                        678999************************985555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-82172No hitNo description
SMARTSM003387.0E-82693IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.142872IPR004827Basic-leucine zipper domain
PfamPF001702.2E-82870IPR004827Basic-leucine zipper domain
CDDcd147085.15E-223082No hitNo description
SuperFamilySSF579595.3E-73073No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
PfamPF141442.7E-30111186IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASDISSLNQ SAAQEKGRGS SSSEKQPDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR  60
IKLAQLEQDL QRTRSQGFFV GGCAAAFGNI SSGAAMFDME YSRWLEDDHR HLSELRTRLH  120
AHLSDTDLQT IVDGYISHYD KIFRLKEAAA KSDVLHLITG MWMTPVERCF VWIGDFRPSE  180
LIKMLVSQLD PLTEHQVMGI CNLQHSSQQA EEALTLGLEQ LYHSLMDSIA SGPVIHEMQQ  240
MAVALSKLAN LEGFLHQADN LRQQILHQLP RILTVRQTAR CFLVIGGYNQ RLRALSSLWA  300
SHGPPEVLIS DDQSCQTTDL QMVMVQQSQN HFSNF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442457.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X4
SwissprotO241601e-119TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0D2TLX90.0A0A0D2TLX9_G
TrEMBLA0A0D2UIJ00.0A0A0D2UIJ0_G
STRINGPOPTR_0009s16590.11e-169(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-162bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]