PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G086200.3
Common NameB456_009G086200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 492aa    MW: 54888.6 Da    PI: 6.7986
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G086200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-11183219238
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                         ++ k  rr+++NReAAr+sR+RKka++++Le    +L
  Gorai.009G086200.3 183 PDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL 219
                         678999************************9754444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-8177228No hitNo description
SMARTSM003387.0E-8182249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.14184228IPR004827Basic-leucine zipper domain
PfamPF001703.7E-8184226IPR004827Basic-leucine zipper domain
CDDcd147082.16E-22186238No hitNo description
SuperFamilySSF579598.84E-7186229No hitNo description
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
PfamPF141445.0E-30267342IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MENHRVGETG LTDSGPSSNY HHHAVLHGMN APISSNFIHQ NGSAFGFGEL EEAIVPHGVE  60
LTNDEAKAPA LFTRSRPSSA TLAMLPSNWS LRFQQTPRVE SWNSRGESTD SVSSSAVNTL  120
PSNQLQPESP ISQKESSSAD HHQPFNHKPL QQQQLEMASD ISSLNQSAAQ EKGRGSSSSE  180
KQPDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLA QLEQDLQRTR SQGFFVGGCA  240
AAFGNISSGA AMFDMEYSRW LEDDHRHLSE LRTRLHAHLS DTDLQTIVDG YISHYDKIFR  300
LKEAAAKSDV LHLITGMWMT PVERCFVWIG DFRPSELIKM LVSQLDPLTE HQVMGICNLQ  360
HSSQQAEEAL TLGLEQLYHS LMDSIASGPV IHEMQQMAVA LSKLANLEGF LHQADNLRQQ  420
ILHQLPRILT VRQTARCFLV IGGYNQRLRA LSSLWASHGP PEVLISDDQS CQTTDLQMVM  480
VQQSQNHFSN F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5816733e-38JX581673.1 Gossypium hirsutum clone NBRI_GE14350 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442457.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X4
SwissprotO241601e-118TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0D2UIJ00.0A0A0D2UIJ0_G
STRINGPOPTR_0009s16590.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-177bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]