PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G031400.1
Common NameB456_009G031400, LOC105770638
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 302aa    MW: 33515.4 Da    PI: 8.6521
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G031400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19170203134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Gorai.009G031400.1 170 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 203
                         *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.05E-12164203No hitNo description
SMARTSM004012.0E-18164214IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.519164200IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.38E-13169201No hitNo description
PfamPF003204.7E-17170203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTSSNCYSSL YPFPIDLNED DQHQHHQLFN LISQPSSSSS SSSSSSSPST SLTCPFSFSP  60
TVQHQQAAFY QSLPQQFHDD QQDQEKIHVP QDGPLRSDCE LRLSIWKKEE RVETHHQSHD  120
SAKWMPSKTR MMSSDHTDLS NSPTPKSEDH QEQKQPSSSP DNNNSTIRVC ADCNTTKTPL  180
WRSGPRGPKS LCNACGIRQR KARRAAAAAA AAGIVVAAET PPSMKSEVQR LKAKRSINDG  240
FPHLKNKKCK LNSQSQSRKK LCFEDLRIIL SKNSAFHGVF PQDEKEAAIL LMALSYGLVH  300
G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270200.0HQ527020.1 Gossypium herbaceum clone NBRI_C2_559 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447374.10.0PREDICTED: GATA transcription factor 21-like
SwissprotQ9SZI66e-40GAT22_ARATH; Putative GATA transcription factor 22
TrEMBLA0A0D2TID80.0A0A0D2TID8_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-39cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]