PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G020200.1
Common NameB456_009G020200, LOC105767694
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 349aa    MW: 39747.1 Da    PI: 9.3732
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G020200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.1e-104385149
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                        s++kGV + k +g+W A+++    n  ++r++lg+f t+ +Aa a++ a
  Gorai.009G020200.1 43 SQFKGVMRQK-NGKWGAQLYS---N--HTRIWLGTFKTEIDAAVAYDSA 85
                        789***8666.9******666...3..5**********99*******88 PP

2B380.71.5e-25166263184
                         EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                         f+k+ltpsdv+k++rlv+pk++a ++                +k+++++l+++d+  r W+++++yr++s+++v+t+GW++F k+++Lk++
  Gorai.009G020200.1 166 FQKKLTPSDVGKLNRLVIPKRYAVKYfpsifwtekenadvADSKTNDVELVFYDKFMRIWKFRYCYRNSSQSFVFTRGWNRFLKEKKLKAN 256
                         99********************************9999997778899******************************************** PP

                         -EEEEEE CS
                  B3  78 DfvvFkl 84 
                         D+v F +
  Gorai.009G020200.1 257 DVVSFFV 263
                         ****974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.31E-2143101No hitNo description
SuperFamilySSF541716.54E-1543101IPR016177DNA-binding domain
PROSITE profilePS5103216.5024499IPR001471AP2/ERF domain
PfamPF008471.4E-54486IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-164499IPR001471AP2/ERF domain
SMARTSM003808.4E-1744105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-29162276IPR015300DNA-binding pseudobarrel domain
CDDcd100178.13E-22165261No hitNo description
SuperFamilySSF1019367.46E-25165267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.139166281IPR003340B3 DNA binding domain
PfamPF023621.9E-22166263IPR003340B3 DNA binding domain
SMARTSM010195.2E-19166281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEEILSVIS SGGGNTNSDV SNSISTTHQA NKRQRCGDKG NSSQFKGVMR QKNGKWGAQL  60
YSNHTRIWLG TFKTEIDAAV AYDSATIKFC PGDTHRNFPW NEITIEEPKF LSHYSAEAVL  120
SMIRDGSYQF KFMDFIKACS RSTKPNTAIK SVGTYSNEGL ICKQLFQKKL TPSDVGKLNR  180
LVIPKRYAVK YFPSIFWTEK ENADVADSKT NDVELVFYDK FMRIWKFRYC YRNSSQSFVF  240
TRGWNRFLKE KKLKANDVVS FFVCECRKEN EVQRFCMIDA NKSGNGGTFV AVNNIHVGIE  300
VDLQLRLGHY YPIGDEKHVQ EEQGSMAAAK PKQDDKTEGF KLFGMQIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2616226110100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147521e-107JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442726.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P57e-90RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2UET70.0A0A0D2UET7_GOSRA; Uncharacterized protein
STRINGGorai.009G020200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-92RAV family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]