PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G285300.1
Common NameB456_008G285300, LOC105762295
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 362aa    MW: 40855.6 Da    PI: 8.2647
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G285300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.52e-371202683135
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec......eaesss 79 
                          k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qa ++i +l++t        s      +      ea++  
  Gorai.008G285300.1 120 SKRDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQARHEIMKLARTrvshnninS------VaaaaaaEAAAVA 204
                         69*************************************************************555544431......1222211222222 PP

                 TCP  80 ssasnsssg............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                         +s s    +              +k ++++k  +k + +++ la++ r+karara+ rt+ k++ ++k
  Gorai.008G285300.1 205 KSPS----StsegevvsalegTISKGKPTEKTVKKTTFQFHPLARDLREKARARAKARTKAKNMWNQK 268
                         2222....123457778888555555557777888888899*******************99988866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-37120264IPR005333Transcription factor, TCP
PROSITE profilePS5136930.277121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.168245262IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MYPSNSNGSS EEPINDHSFF HFVMDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDVF  60
LHQHHDLLFH HEQNHQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNADT EVKQQKRSSS  120
KRDRHSKINT ANGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA  180
RTRVSHNNIN SVAAAAAAEA AAVAKSPSST SEGEVVSALE GTISKGKPTE KTVKKTTFQF  240
HPLARDLREK ARARAKARTK AKNMWNQKLC CSTDETKLSS WWSFQTGEES SIQQHHHNKK  300
INPSLQQVAG GDMIDESLAI INKWNPDSMF NCLQNSGINQ EHQITGFLPF GKPWEGYNNK  360
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435620.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A0D2UBF10.0A0A0D2UBF1_GOSRA; Uncharacterized protein
STRINGGorai.008G285300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2429734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-22TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]