PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G230600.1
Common NameB456_008G230600, LOC105765057
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 425aa    MW: 47624.5 Da    PI: 8.3474
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G230600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.6e-2325113186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +Wtk+e+laLi+a++e++ +lrrg+lk+ +W++vs+++   ++ g  +s++qC++k+e+l+kry+++k+++ k+  + ss++ ++  l+
  Gorai.008G230600.1  25 CWTKDETLALIDAYKEKWFALRRGNLKASDWDAVSDVVssaSDPGTVKSSVQCRHKIEKLRKRYRAEKQRSLKNLGKFSSSWDLYPLLD 113
                         8*************************************998899*****************************999*******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2024115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSTTTSPPLP QPSSATAARR VPPPCWTKDE TLALIDAYKE KWFALRRGNL KASDWDAVSD  60
VVSSASDPGT VKSSVQCRHK IEKLRKRYRA EKQRSLKNLG KFSSSWDLYP LLDSMNFAST  120
SVAGSDDQDH SIDHKVTVFG DFCLKSNKRE NIDGNSGSNL GFDHEFRGGH NSSFNFDHKW  180
QENGGFVAKG IKKFKSDGRI GDGYGSMVDF DHSFGQDVDS LGEFPLKTLG DRSFLNVGFK  240
SKNYGCPNLN YDYDNDSKEY SIDEEMGFRA RDSGAWDSVP QGIHQKKRGR VDMNFEPGGD  300
CRGLNGDASC SRPGLERKNA GAGVKRGVDP VDEMVSSIKL LAEGFVRMEK MKMEMVKEIE  360
KMRMEMEMKH NEMILESQQK IVDAFSSALS EKKKKKKKPS LMFSNMNGNG VEEWQEDAFI  420
KKER*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390398EKKKKKKKP
2391397KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439411.10.0PREDICTED: uncharacterized protein LOC105765057
TrEMBLA0A0D2T5E10.0A0A0D2T5E1_GOSRA; Uncharacterized protein
STRINGGorai.008G230600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-23Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]