PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G199700.2
Common NameB456_008G199700, LOC105764722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 328aa    MW: 36256.9 Da    PI: 6.1773
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G199700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.68.2e-2955150374
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssas 71 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl++ k  i++l+ +                      s+ +++
  Gorai.008G199700.2  55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGVGQPSKVVDWLLEATKDDIDKLPPLqmplgfnnqfhqpflvphepnpSFLDPN 145
                         79*************************************************************8888888877777777543333221112 PP

                 TCP  72 ec..e 74 
                         ++  +
  Gorai.008G199700.2 146 SMlmK 150
                         22221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-2656129IPR005333Transcription factor, TCP
PROSITE profilePS5136929.03856114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MISSSREAKQ EGETNDGSGG GNKLSKGPSS SSSSRHWSSA GFRNPRIVRV SRSFGGKDRH  60
SKVCTVRGLR DRRIRLSVPT AIQLYDLQER LGVGQPSKVV DWLLEATKDD IDKLPPLQMP  120
LGFNNQFHQP FLVPHEPNPS FLDPNSMLMK DGEEEDQRMA GDRDKGKWIK MNEDENHGGN  180
NNNNNIEDQR LFPLTNHSPF PGLLNNGMPL NSCYHWEPSG LSLSQFGNHG LMAPQTENFF  240
NGNTTSVPLP CSTTVPSATM ASFFPTYTPY GTNPGSNDSR QMNYLQLLSS NFLSNSMKPF  300
SLNVNAGLTH TQNDDENHGD DQDNTDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1861115155Putative transcription factor PCF6
5zkt_B2e-1861115155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438890.10.0PREDICTED: transcription factor TCP17
RefseqXP_012438891.10.0PREDICTED: transcription factor TCP17
SwissprotQ9FME36e-54TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A0D2U6C90.0A0A0D2U6C9_GOSRA; Uncharacterized protein
STRINGGorai.008G199700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]