PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G174500.1
Common NameB456_008G174500, LOC105764438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 197aa    MW: 22605.6 Da    PI: 6.5113
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G174500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.51.7e-1481130554
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                         +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++
  Gorai.008G174500.1  81 RKQRRMISNRESARRSRMRKQKHLDELLSQVVRLRNENQSLIDKLKHVSD 130
                         79****************************************99998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-1577141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.86479142IPR004827Basic-leucine zipper domain
PfamPF001704.3E-1281130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-1281153No hitNo description
SuperFamilySSF579591.61E-1281130No hitNo description
CDDcd147029.46E-1982133No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVPSELSTGL HYLAPENPIL IPDNLGMMQN TIPGFHFDRF LNIQSNSHIP LPAHEFIAQS  60
LCTSTSDEAE EHQLSRIIDE RKQRRMISNR ESARRSRMRK QKHLDELLSQ VVRLRNENQS  120
LIDKLKHVSD CHDQVVQENA RLKEEASDLR RMVTDLRTGS PYSLALRELE DVPCYTAYLR  180
AEPTNQSIAN SVDLLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438457.11e-144PREDICTED: basic leucine zipper 43-like
TrEMBLA0A0D2PWI41e-144A0A0D2PWI4_G
STRINGVIT_01s0010g00930.t012e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-40basic leucine-zipper 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]