PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G123200.4
Common NameB456_008G123200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 277aa    MW: 29525.8 Da    PI: 9.8389
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G123200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.34e-09251275125
                         XXXXCHHHCHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKk 25 
                         e+elkrerrkq+NRe+ArrsR+RK+
  Gorai.008G123200.4 251 ERELKRERRKQSNRESARRSRLRKQ 275
                         89**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.0E-33290IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.4E-20119235No hitNo description
Gene3DG3DSA:1.20.5.1704.7E-7245275No hitNo description
PfamPF001701.1E-6251275IPR004827Basic-leucine zipper domain
CDDcd147021.47E-11256275No hitNo description
PROSITE patternPS000360258273IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
DEGKSSKSDK SSSPAPPDQT NIHVYPDWAA MQAYYGPRVP MPPYYNSAVA SGHAPPPYMW  60
GPTQAIMPPY GTPYATIYPH GGVYVHPTVP MGSHGHGVPS SPKAAPETPT KFSGNTNGGL  120
MKKLKGFDGL AMSIGNSTAE NAESGAEPRP SQSAETEGST DDSDGNTTGA DQTRWKRSRE  180
GTPAIGVEGN NEARSKPVAA REATATISPK PVGSVLPSGM TTSLELSNPP AKSSPTNVPR  240
VMTSEIWLQN ERELKRERRK QSNRESARRS RLRKQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273RRSRLRK
2267274RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437735.11e-179PREDICTED: G-box-binding factor 3-like isoform X2
SwissprotP427761e-92GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D2PTN50.0A0A0D2PTN5_G
STRINGGLYMA16G03190.11e-112(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.17e-91G-box binding factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]