PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G123200.1
Common NameB456_008G123200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 372aa    MW: 39973.4 Da    PI: 9.2471
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G123200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1734.4e-23252314163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++kl+ e+
  Gorai.008G123200.1 252 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENTTLRSEINQLTEKSEKLRLEN 314
                         89*********************************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.2E-33290IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.6E-19119236No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-18246311No hitNo description
SMARTSM003382.2E-22252316IPR004827Basic-leucine zipper domain
PfamPF001702.4E-21252314IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.748254317IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-11255311No hitNo description
CDDcd147029.45E-23257306No hitNo description
PROSITE patternPS000360259274IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
DEGKSSKSDK SSSPAPPDQT NIHVYPDWAA MQAYYGPRVP MPPYYNSAVA SGHAPPPYMW  60
GPTQAIMPPY GTPYATIYPH GGVYVHPTVP MGSHGHGVPS SPKAAPETPT KFSGNTNGGL  120
MKKLKGFDGL AMSIGNSTAE NAESGAEPRP SQSAETEGST DDSDGNTTGA DQTRWKRSRE  180
GTPAIAGVEG NNEARSKPVA AREATATISP KPVGSVLPSG MTTSLELSNP PAKSSPTNVP  240
RVMTSEIWLQ NERELKRERR KQSNRESARR SRLRKQAETE ELARKVESLT AENTTLRSEI  300
NQLTEKSEKL RLENATLVEG LKNGELGYAK DIIMNKKADK EGEMYEKKSN SGAKLHQLFD  360
PSPRADAVAA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274RRSRLRK
2268275RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437734.10.0PREDICTED: G-box-binding factor 3-like isoform X1
SwissprotP427761e-127GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D2U2070.0A0A0D2U207_G
STRINGGLYMA03G41590.51e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-125G-box binding factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]