PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G114400.1
Common NameB456_008G114400, LOC105763804
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 228aa    MW: 23934.4 Da    PI: 7.8012
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G114400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.24.5e-41271271100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l
  Gorai.008G114400.1  27 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHVPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNL 117
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael++l+++
  Gorai.008G114400.1 118 QAELSYLQAH 127
                         *****99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.04626128IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-4027125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSANTCSSGG AAGSSTGGAV GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGAAHFAAV  60
HKVFGASNVS KLLLHVPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE  120
LSYLQAHLAT LELPTPPLPS PPPPPPQQTL MEPPPLSISD LPPATYDLST LFDPMVQPSW  180
AMQQRQINQF DSSSLGSGDL QALARELLHR QGSPPRLPAS PSPSFSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157515e-47JX615751.1 Gossypium hirsutum clone NBRI_GE59919 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437614.11e-165PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-81LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0D2RDP51e-165A0A0D2RDP5_G
STRINGGLYMA03G02620.13e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-76LOB domain-containing protein 18
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]