PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G102300.3
Common NameB456_008G102300, LOC105763676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 364aa    MW: 40968.7 Da    PI: 6.4302
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G102300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.7e-1177118445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         +k +rr+++NReAAr+sR+RKka++++Le    +L +  k+L
  Gorai.008G102300.3  77 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQLEKEL 118
                         689**************************8666666555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-773123No hitNo description
SMARTSM003383.1E-574134IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.74976120IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-778118No hitNo description
PfamPF001706.3E-878114IPR004827Basic-leucine zipper domain
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141447.4E-30165240IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDFPSTQFVP SRMMGTYEPI HQIGMWGENF KSIGNPSISA SVIVEVDNKL ENESETASHE  60
MPAPSCKHDQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEKELEQ  120
AREQQGLYIG GGLEAGHLGF SGVVNPGIAA FEMEYKHWMQ VQNRQLGELR TALNAQISDI  180
ELRIVVENGM SHYFELFRMK STVAKADVFY VMSGTWKTSA ERFFSWIGGF RPSELLKVLV  240
AQLDPLTDQQ IFEVCNLKQS CQQAEDALSQ GMEKLQETVS ATLAAGQLGQ GTYFPQVAMA  300
MEKLEALVCF VNQADHLRQE TLQQMSHILT TRQAARGLLA LGEYIQRLQD LSTLWATHPR  360
EPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437434.10.0PREDICTED: transcription factor TGA1-like isoform X3
SwissprotQ392371e-179TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0D2SXA90.0A0A0D2SXA9_G
STRINGVIT_07s0031g01320.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-172bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]