PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G102300.2
Common NameB456_008G102300, LOC105763676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 401aa    MW: 45222.6 Da    PI: 6.3622
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G102300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.3e-1177118445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         +k +rr+++NReAAr+sR+RKka++++Le    +L +  k+L
  Gorai.008G102300.2  77 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQLEKEL 118
                         689**************************8666666555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.9E-873122No hitNo description
SMARTSM003381.6E-674134IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.74976120IPR004827Basic-leucine zipper domain
PfamPF001705.6E-878113IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-778118No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF077276.3E-6148192IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PfamPF141448.6E-30202277IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDFPSTQFVP SRMMGTYEPI HQIGMWGENF KSIGNPSISA SVIVEVDNKL ENESETASHE  60
MPAPSCKHDQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEKELEQ  120
AREQGLYIGG GLEAGHLGFS GVVNPGDDHI EQKLKKGLAE QFEIKDLGAL KYFLGMEFSR  180
SKEGIAAFEM EYKHWMQVQN RQLGELRTAL NAQISDIELR IVVENGMSHY FELFRMKSTV  240
AKADVFYVMS GTWKTSAERF FSWIGGFRPS ELLKVLVAQL DPLTDQQIFE VCNLKQSCQQ  300
AEDALSQGME KLQETVSATL AAGQLGQGTY FPQVAMAMEK LEALVCFVNQ ADHLRQETLQ  360
QMSHILTTRQ AARGLLALGE YIQRLQDLST LWATHPREPA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437433.10.0PREDICTED: transcription factor TGA4-like isoform X2
SwissprotQ392371e-173TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0D2TTK00.0A0A0D2TTK0_G
STRINGVIT_07s0031g01320.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-165bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]