PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G068900.3
Common NameB456_008G068900, LOC105763291
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 324aa    MW: 33965.5 Da    PI: 5.7914
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G068900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.71.4e-24224286163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+
  Gorai.008G068900.3 224 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRDELKKLSDECEKLTSEN 286
                         89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-24372IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.1E-20219284No hitNo description
PfamPF001704.4E-22224286IPR004827Basic-leucine zipper domain
SMARTSM003387.1E-22224288IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346226289IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-12227283No hitNo description
CDDcd147024.72E-24229279No hitNo description
PROSITE patternPS000360231246IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MPTTVSYPDW STQMQAYYGA AATPPLFAST VASPTPHPYI WGGQHPLMPP YGTPVPYPAV  60
YPPRGVYAHP NMAPMPSSAR NNGADGKDRG ATKKPKGSSG SKVGESAKAT SGSGNDGGSQ  120
SGESGSEGTS DRSDESNQQE VNAGKKGSFE QMLADANAQG KAAGALVPAE PIVSMPATTL  180
NIGMDLWSAS PAATGAPKTR PNASGTVATV PAGAVMPDQW IQDERELKRQ KRKQSNRESA  240
RRSRLRKQAE CEELQAKVES LANENHTLRD ELKKLSDECE KLTSENSSIK DELMRICGPE  300
AISNLEQGNP SPVGEAGGDE GNG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246RRSRLRK
2240247RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436919.10.0PREDICTED: G-box-binding factor 1-like isoform X1
SwissprotP427741e-105GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0D2SWA20.0A0A0D2SWA2_G
STRINGPOPTR_0007s12460.11e-143(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.16e-86G-box binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]