PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G068900.1
Common NameB456_008G068900, LOC105763291
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 345aa    MW: 36153.8 Da    PI: 5.2958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G068900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.61.6e-24245307163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+
  Gorai.008G068900.1 245 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRDELKKLSDECEKLTSEN 307
                         89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.3E-30193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.2E-20240305No hitNo description
PfamPF001704.9E-22245307IPR004827Basic-leucine zipper domain
SMARTSM003387.1E-22245309IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346247310IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.63E-12248304No hitNo description
CDDcd147025.42E-24250300No hitNo description
PROSITE patternPS000360252267IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGTEEESTPA KPSKPTASTQ EMPTTVSYPD WSTQMQAYYG AAATPPLFAS TVASPTPHPY  60
IWGGQHPLMP PYGTPVPYPA VYPPRGVYAH PNMAPMPSSA RNNGADGKDR GATKKPKGSS  120
GSKVGESAKA TSGSGNDGGS QSGESGSEGT SDRSDESNQQ EVNAGKKGSF EQMLADANAQ  180
GKAAGALVPA EPIVSMPATT LNIGMDLWSA SPAATGAPKT RPNASGTVAT VPAGAVMPDQ  240
WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQAKVE SLANENHTLR DELKKLSDEC  300
EKLTSENSSI KDELMRICGP EAISNLEQGN PSPVGEAGGD EGNG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261267RRSRLRK
2261268RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436919.10.0PREDICTED: G-box-binding factor 1-like isoform X1
SwissprotP427741e-113GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0D2SWA20.0A0A0D2SWA2_G
STRINGPOPTR_0007s12460.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-93G-box binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]