PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G067800.1
Common NameB456_008G067800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 222aa    MW: 24551.3 Da    PI: 9.8917
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G067800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.72.1e-20107141135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG+++rk+++
  Gorai.008G067800.1 107 CANCDTTSTPLWRNGPRGPKSLCNACGIRFRKEER 141
                         ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF892607.06E-5766No hitNo description
SMARTSM004011.5E-18101154IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.653101137IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13104143No hitNo description
Gene3DG3DSA:3.30.50.102.4E-16105141IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.00E-13106138No hitNo description
PfamPF003204.7E-18107141IPR000679Zinc finger, GATA-type
PROSITE patternPS003440107132IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLFSMPNHKS FDETDMYRFT SSSSSSVDCT LSLGTPSTRL CVNDSDKRLR HGRSSGNSCV  60
SNFCLDLLQN KNMPYPLQSA KDSRGSNGNS SSNSSGKGND PLLARRCANC DTTSTPLWRN  120
GPRGPKSLCN ACGIRFRKEE RRATNAIKSS GATGSMLEQL QHLGYHHHQN KNNSRVHHSQ  180
NQKKPCFSPV NGFRVIEDTD RDSATGIPFL SWRLNVHDLT R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164151e-148JX616415.1 Gossypium hirsutum clone NBRI_GE61057 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435651.11e-163PREDICTED: GATA transcription factor 18-like isoform X2
SwissprotQ8LC792e-55GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A0D2PQ221e-164A0A0D2PQ22_G
STRINGPOPTR_0005s12440.14e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.17e-52GATA family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]