PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G363600.1
Common NameB456_007G363600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 86aa    MW: 10178 Da    PI: 10.5535
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G363600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.83.3e-091059250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE.EEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaeva.viifsstgklyeys 50
                        ri n+s r   + kRr g++KK +EL +L + +   vi+   + +l  +s
  Gorai.007G363600.1 10 RIPNDSARRACLKKRRLGLMKKMSELTILYGGNTYhVIYCPDESELILWS 59
                        899**************************876654155555556666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-16184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.021148IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-6160IPR002100Transcription factor, MADS-box
CDDcd002663.34E-16385No hitNo description
PRINTSPR004043.6E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-101051IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MRRKKVMLTR IPNDSARRAC LKKRRLGLMK KMSELTILYG GNTYHVIYCP DESELILWSS  60
HNEVQQKLDE YRKTHKLDQL KKMVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVMLTRIPNDSARRACLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722546.12e-26PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A0D2R4Y94e-56A0A0D2R4Y9_GOSRA; Uncharacterized protein
STRINGGorai.007G363600.16e-57(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-11AGAMOUS-like 80
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]