PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G352600.1
Common NameB456_007G352600, LOC105761575
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 463aa    MW: 50892.9 Da    PI: 8.9419
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G352600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.2e-10176217445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.007G352600.1 176 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 217
                         6889*************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.4E-9167220No hitNo description
SMARTSM003381.2E-9173236IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415175219IPR004827Basic-leucine zipper domain
CDDcd147083.26E-22177229No hitNo description
SuperFamilySSF579596.88E-7177220No hitNo description
PfamPF001707.7E-7177217IPR004827Basic-leucine zipper domain
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
PfamPF141445.0E-32259335IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGSRTLKNGV ENNKKDLSAM PSYVPSVPTS TSSGAEANAI RSSQLPDFGN LDQFRIEDAI  60
DLTRNPLFNQ IKSSSQALAD AQFGALSKTL ASADNNLSAA VVGSQTLPLQ KDNQPNLPHI  120
SVGRENWGDS NMADGSPRTD TSTDDTEEKN QRFGRGQTNA IVASDSSDRS KDKTDQKTLR  180
RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISST GDQSHSMSGN  240
GALAFDVEYS RWLEEHNKHI NELRAAVNSH AGDAELRTIV DSVTAHFDDI FRLKGIAAKA  300
DVFHILSGMW KTPAERCFLW IGGFRSSELL KLLASQLEPL TEQQFMGIQN LQQSSQQAED  360
ALSQGMEALQ QSLAETLANG SPAPSGPSGN VANYMGQMAM AMGKLGTLEG FLRQADNLRQ  420
QTLQQMHRIL TTRQSARALL AINDYFSRLR ALSSLWLARP RE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.8530.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487474020.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434880.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0D2TRW40.0A0A0D2TRW4_G
STRINGPOPTR_0016s03590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-147TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]