PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G283800.1
Common NameB456_007G283800, LOC105804699
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 668aa    MW: 75557.8 Da    PI: 6.5439
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G283800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.45e-15121182268
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                         W+++evlaL+++r+++e+++ +       We+vs+k+++ gf+rs+ +Ckek+e+ n+++  i+ ++
  Gorai.007G283800.1 121 WSNDEVLALLTVRSSIENWFPEF-----TWEHVSRKLADLGFKRSADKCKEKFEEENRYFNSINCSK 182
                         ********************998.....9*******************************9988665 PP

2trihelix95.93.7e-30514602186
            trihelix   1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+++evlaLi++r ++ ++   +k     k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  Gorai.007G283800.1 514 RWPRDEVLALINLRCSLYNNGDHEKegtaIKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDINKKR-SLDSRTCPYFHQLS 602
                         8**************9998888653344499*******************************************8.9999********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071716117174IPR001005SANT/Myb domain
PfamPF138372.8E-10119182No hitNo description
PROSITE profilePS500905.982120172IPR017877Myb-like domain
SMARTSM007170.24511577IPR001005SANT/Myb domain
PfamPF138377.3E-19513602No hitNo description
CDDcd122031.36E-24513582No hitNo description
PROSITE profilePS500906.539514575IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MFDGVPDQLH QFIGASSASA RTTTTLLLPL SFTSSNGITS FDPLFTSSSN SHHQQVPPQL  60
HHHHQQQQQP QFLQSLHQQK NNEESTTSLV GMNMEINGRD QRSIAEPIDN LHRHHHHHHP  120
WSNDEVLALL TVRSSIENWF PEFTWEHVSR KLADLGFKRS ADKCKEKFEE ENRYFNSINC  180
SKNYRIFSEL EELYQAENPP PPPPHHHHHS QQQQVAVVAD ENNKNVEKSR EDEDNMGQNL  240
EADSRNIDEL YQTSPANNTA ISSDQDNKKV VENKANYDDN NAAAAATNKK RKRVKKLELF  300
KGFCEDIVNK LMIQQEEMHN KLIEDMVKRD EEKVAREEAW KKQELDRINQ ELELRAKEQA  360
IAGDRQATII KFLSKFSQTG SSKKQCFGRV NEDVVKVPSE CSNPPIASSS PLVAVAENPN  420
PIVTDQNKVD QVSTTSPSSM ILAHQNKQSM PISMTESQAP QNPNPETPDT SSLAPQNPNS  480
VSAESNPLPP TSPLTVNKAP QNPTSNEKED LGKRWPRDEV LALINLRCSL YNNGDHEKEG  540
TAIKAPLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKDINKKRSL DSRTCPYFHQ  600
LSTLYSQGTL IAPSDGPENR SPLAENHPKL PETGKDSSQR GDKDSTVHVS GGNETNMVQV  660
PGFEFEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288295KKRKRVKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642021e-154JX964202.1 Gossypium hirsutum clone NBRI_TRANS-471 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492854.10.0PREDICTED: trihelix transcription factor GTL2 isoform X2
TrEMBLA0A0D2SL930.0A0A0D2SL93_GOSRA; Uncharacterized protein
STRINGGorai.007G283800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-108Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]