PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G241400.1
Common NameB456_007G241400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 225aa    MW: 24932.9 Da    PI: 9.4314
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G241400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.4e-10125165545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         k  rr+++N eAAr+sR+RKka++++Le     L++  ++L
  Gorai.007G241400.1 125 KTLRRLAQNQEAARKSRLRKKAYVQQLESSRLRLTELEQEL 165
                         788*************************8766666655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.8E-8118169No hitNo description
SMARTSM003383.5E-8121192IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979123167IPR004827Basic-leucine zipper domain
PfamPF001705.9E-7125165IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.69E-7125167No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRELVNLKQQ GSIFSLKSNN FGVFSNTLHY GALNMSIGAT MIVSSGTGCL DTGQFMYQKG  60
ATFGAPLGNG QIENWADSGL ANNSQQTDTS TDVDTDHTKQ LPRVQHGAVM VNTVDQPKSK  120
NGDQKTLRRL AQNQEAARKS RLRKKAYVQQ LESSRLRLTE LEQELERTQQ QGIFIASGLS  180
GDHGHTVAGN AALAFDMEYG RWFDEHQRLK LCNNLIHRMI NYGR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438631.11e-113PREDICTED: transcription factor HBP-1b(c38)-like
TrEMBLA0A0D2SQI81e-168A0A0D2SQI8_G
STRINGPOPTR_0008s11710.16e-87(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-32bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]