PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G205700.2
Common NameB456_007G205700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 308aa    MW: 32680.8 Da    PI: 5.1272
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G205700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.13.8e-23213275163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN +L+ el++l++e++kl se+
  Gorai.007G205700.2 213 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVENLANENCTLRGELQKLSDECEKLSSEN 275
                         89**********************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.7E-31194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.2E-19208273No hitNo description
SMARTSM003385.1E-19213277IPR004827Basic-leucine zipper domain
PfamPF001707.7E-21213275IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.036215278IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-11216272No hitNo description
CDDcd147024.96E-22218268No hitNo description
PROSITE patternPS000360220235IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGTEEESSPA NHSKPTASAQ EMPTTPAYPD WSSQMQAYYG AGATTPPFFA STVASTTPHP  60
YIWGGQHPLM PPYGTPVPYP VIYPPGGVYA HPNMAIAPSS VPNNADHEEK SADDKDRGAT  120
KKSKGTSGSK VEESGKAASG SGKDGGSQSG ESGSEGTADG SDENNQQEPG AVKKGSFGQM  180
LADGAAKMRP NVSGAVAAAA PGVVMHDQWI QDERELKRQK RKQSNRESAR RSRLRKQAEC  240
EELQARVENL ANENCTLRGE LQKLSDECEK LSSENSSIKE ELMRICGPDA LTKLEQENPS  300
SVVEGNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235RRSRLRK
2229236RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491689.10.0PREDICTED: G-box-binding factor 1-like
SwissprotP427741e-109GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0D2SNM30.0A0A0D2SNM3_G
STRINGPOPTR_0007s12460.11e-135(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-76G-box binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]