PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G147300.3
Common NameB456_007G147300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 210aa    MW: 24068 Da    PI: 6.9125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G147300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.3e-32129249128
                 NAM  49 kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ vl+  ++e+vg++ktLvfy++rap+g+kt W+mhe+rl
  Gorai.007G147300.3  12 EAAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRMVLDPtTEEVVGMRKTLVFYRNRAPNGVKTGWIMHEFRL 92 
                         44555789**************************************977888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.5281111IPR003441NAC domain
SuperFamilySSF1019416.15E-409111IPR003441NAC domain
PfamPF023658.9E-161992IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGLIGDLIKL TEAAKLNANE WYFFSFRDRK YATGFRTNRA TTSGYWKATG KDRMVLDPTT  60
EEVVGMRKTL VFYRNRAPNG VKTGWIMHEF RLHTPHLPPK EEWVLCRVFH KSKEENSAKL  120
SSPMMLETSS THHAHETAYQ HISSLSTTTP TYQSHAQCLL NLLQYNSHQE NNSNEVSSKV  180
DDGYEFLWDM EENSLECSWG GFQLGGHEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-281011162165NO APICAL MERISTEM PROTEIN
1ut4_B1e-281011162165NO APICAL MERISTEM PROTEIN
1ut7_A1e-281011162165NO APICAL MERISTEM PROTEIN
1ut7_B1e-281011162165NO APICAL MERISTEM PROTEIN
3swm_A2e-281011165168NAC domain-containing protein 19
3swm_B2e-281011165168NAC domain-containing protein 19
3swm_C2e-281011165168NAC domain-containing protein 19
3swm_D2e-281011165168NAC domain-containing protein 19
3swp_A2e-281011165168NAC domain-containing protein 19
3swp_B2e-281011165168NAC domain-containing protein 19
3swp_C2e-281011165168NAC domain-containing protein 19
3swp_D2e-281011165168NAC domain-containing protein 19
4dul_A1e-281011162165NAC domain-containing protein 19
4dul_B1e-281011162165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472170.0KC847217.1 Gossypium hirsutum NAC domain protein NAC40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314147.11e-149protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012490707.11e-149PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0D2P9231e-157A0A0D2P923_GOSRA; Uncharacterized protein
STRINGGorai.007G147300.11e-148(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-61NAC domain containing protein 74
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]