PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G122800.1
Common NameB456_007G122800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 160aa    MW: 18335.9 Da    PI: 7.4144
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G122800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-124089554
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                        ++ +r+ +NRe+ArrsR RK+++++ L ++v +L++ N++  ++++  ++
  Gorai.007G122800.1 40 RKRKRMLSNRESARRSRMRKQKRLQDLVQEVSALQKDNSQISERISVATQ 89
                        57899************************************999986665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-1536100IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-103785No hitNo description
PROSITE profilePS5021710.7373885IPR004827Basic-leucine zipper domain
PfamPF001701.1E-104094IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.19E-114093No hitNo description
CDDcd147021.16E-174189No hitNo description
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSYAIIMHRI RILHSFSVVF LYWSASSSDS DPQYANIDER KRKRMLSNRE SARRSRMRKQ  60
KRLQDLVQEV SALQKDNSQI SERISVATQC SIEMQSANNV LRAQAMELTE RLRSLNSVLQ  120
VVEEVGGYAV DIPEIPEPWQ LPCPIQPIMA SVDMFEYDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13960RKRKRMLSNRESARRSRMRKQK
25259RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490328.13e-95PREDICTED: ocs element-binding factor 1-like
SwissprotQ9LZP89e-61BZP53_ARATH; bZIP transcription factor 53
TrEMBLA0A0D2TDR41e-114A0A0D2TDR4_G
STRINGPOPTR_0002s19720.14e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30362763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.15e-62basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]