PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G114500.8
Common NameB456_007G114500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 306aa    MW: 35362 Da    PI: 7.1308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G114500.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.15.8e-39441743128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          G+rFhPtd el+++yL +k  g++  + ++i+e+ di+ +ePw+Lp  ++v ++++ wyfF + + ky++++r nr+t++g+Wk tgk +
  Gorai.007G114500.8  44 TGYRFHPTDFELLNYYLLNKNLGRDSLV-QAIAELeDICGLEPWQLPghSNVPSGDHVWYFFYRPSFKYQNSSRINRTTNEGFWKPTGKPR 133
                         7***********************9777.7788888***********5337778999********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                         ++++  ++ ++g k+tLvfykg  ++++  kt W+mhey+l
  Gorai.007G114500.8 134 RIMAMdQDIEIGKKRTLVFYKGhvSDNTKMKTGWIMHEYEL 174
                         ***9856677**********98445666779********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4341192IPR003441NAC domain
PROSITE profilePS5100543.81342192IPR003441NAC domain
PfamPF023656.7E-2244174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRNKKGYHII HRIPNEERFS SYYCYYLFWV AVGYYLWKKI LTITGYRFHP TDFELLNYYL  60
LNKNLGRDSL VQAIAELEDI CGLEPWQLPG HSNVPSGDHV WYFFYRPSFK YQNSSRINRT  120
TNEGFWKPTG KPRRIMAMDQ DIEIGKKRTL VFYKGHVSDN TKMKTGWIMH EYELTATLPN  180
QTTFVLCKLK RKFGKAEVSC IDEGQSSHYL PPTLGNYIAN NANQAEAARC LTANSNPNEM  240
LTQLEALNDH EELEHQYIEL WNSYVGGDFP KHDGSGDFGT HGAENAIANV SFLGERCSFM  300
LVNEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-254519720170NO APICAL MERISTEM PROTEIN
1ut4_B5e-254519720170NO APICAL MERISTEM PROTEIN
1ut7_A5e-254519720170NO APICAL MERISTEM PROTEIN
1ut7_B5e-254519720170NO APICAL MERISTEM PROTEIN
3swm_A5e-254519723173NAC domain-containing protein 19
3swm_B5e-254519723173NAC domain-containing protein 19
3swm_C5e-254519723173NAC domain-containing protein 19
3swm_D5e-254519723173NAC domain-containing protein 19
3swp_A5e-254519723173NAC domain-containing protein 19
3swp_B5e-254519723173NAC domain-containing protein 19
3swp_C5e-254519723173NAC domain-containing protein 19
3swp_D5e-254519723173NAC domain-containing protein 19
4dul_A5e-254519720170NAC domain-containing protein 19
4dul_B5e-254519720170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472480.0KC847248.1 Gossypium hirsutum NAC domain protein NAC71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313995.10.0NAC domain-containing protein 86-like
RefseqXP_012490211.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A0D2SI760.0A0A0D2SI76_GOSRA; Uncharacterized protein
STRINGGorai.007G114500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.13e-31NAC domain containing protein 45
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]