PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G105100.7
Common NameB456_007G105100, LOC105802762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 381aa    MW: 40716.4 Da    PI: 7.0914
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G105100.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.36.9e-23261323163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+
  Gorai.007G105100.7 261 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 323
                         89*******************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.0E-33192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.7E-21121241No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-18255320No hitNo description
PfamPF001701.3E-20261323IPR004827Basic-leucine zipper domain
SMARTSM003388.4E-21261325IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128263326IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-11264317No hitNo description
CDDcd147024.45E-22266315No hitNo description
PROSITE patternPS000360268283IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGNNEEGKPS KSDKSSSPVP TNNIHVYPDW AAMQAYYGPH VNMPPYYSSA VASGHAPPPY  60
MWGPTQPMMP SYGAPYAAIY SHGGVYAHPA VPLASHSLGV PSSPAAAGPV ETPTKSPGNT  120
EQGLMKKLKG FDGLAISIGN GTAENAEGRA KPRPSHSLET AGSADGSDGN TTGTDQSRRK  180
RSREGTPTIG EDEKIEAKSN QVAAGEVTAT ISPKLIGTVV SPGMTTGTIL ELRNTPTMNA  240
MSSAMGVHCG VMPTEVWLQN ERELKRERRK QSNRESARRS RLRKQAETEE LARKVESLTS  300
ENAALRSEIN QLTEMSEKVR LENAILVEEL KNAQLGHAQE NILNKKEDKE GEMGEKRSDS  360
GAKLHQLLDP SPRDDAVAAG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283RRSRLRK
2277284RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490054.10.0PREDICTED: G-box-binding factor 3-like isoform X6
SwissprotP427761e-126GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D2SHR80.0A0A0D2SHR8_G
STRINGGLYMA03G41590.51e-150(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-118G-box binding factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]