PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G105100.1
Common NameB456_007G105100, LOC105802762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 390aa    MW: 41741.6 Da    PI: 6.8724
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G105100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.37.1e-23270332163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+
  Gorai.007G105100.1 270 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 332
                         89*******************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.6E-35194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-20123250No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-18264329No hitNo description
SMARTSM003388.4E-21270334IPR004827Basic-leucine zipper domain
PfamPF001701.4E-20270332IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128272335IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-11273326No hitNo description
CDDcd147022.30E-22275324No hitNo description
PROSITE patternPS000360277292IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGNNEEGKPS KSDKSSSPVP TDQNNIHVYP DWAAMQAYYG PHVNMPPYYS SAVASGHAPP  60
PYMWGPTQPM MPSYGAPYAA IYSHGGVYAH PAVPLASHSL GVPSSPAAAG PVETPTKSPG  120
NTEQGLMKKL KGFDGLAISI GNGTAENAEG RAKPRPSHSL ETAGSADGSD GNTTGTDQSR  180
RKRSREGTPT IGMTPFFTGE DEKIEAKSNQ VAAGEVTATI SPKLIGTVVS PGMTTGTILE  240
LRNTPTMNAM SSAMGVHCGV MPTEVWLQNE RELKRERRKQ SNRESARRSR LRKQAETEEL  300
ARKVESLTSE NAALRSEINQ LTEMSEKVRL ENAILVEELK NAQLGHAQEN ILNKKEDKEG  360
EMGEKRSDSG AKLHQLLDPS PRDDAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286292RRSRLRK
2286293RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490047.10.0PREDICTED: G-box-binding factor 3-like isoform X1
RefseqXP_012490048.10.0PREDICTED: G-box-binding factor 3-like isoform X1
SwissprotP427761e-126GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D2SB110.0A0A0D2SB11_G
STRINGGLYMA03G41590.51e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-118G-box binding factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]