PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G094200.1
Common NameB456_007G094200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 339aa    MW: 35440.4 Da    PI: 9.539
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G094200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.77e-37671661103
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                         aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++    +   +  + s  +a
  Gorai.007G094200.1  67 AAPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTS--NA 153
                         689**************************************************************7777744421..1111111111..11 PP

                 TCP  91 aksaakskksqks 103
                         +++   ++k++++
  Gorai.007G094200.1 154 NPEPGDPSKKKHK 166
                         1111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.4E-3073163IPR005333Transcription factor, TCP
PROSITE profilePS5136926.42174128IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAAIHKLEVE EDADPRAVVL SINGGGDAAP SKNPKEEPDI DTTLGAMPTA VHVPSGVPVP  60
PVTAAPAAPK RASTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GETIRWLLEH  120
AEPAIIAATG TGTVPAIAMS VNGTLKIPTT SNANPEPGDP SKKKHKRPAN SEYVDINDAV  180
SVSSGLAPVV TPQQQQQQQA AVLPQGLVPI WAIPSNTVVP GAFFMVPPMA SMAGPSTQPH  240
IFTFPATATP VINISARPIS SFVSAMQAAT PSQLQSNVAV TSCTVPVSKA AKTTSVMAPS  300
SSSAASATTT TTTQMLRDFS LEIYDKQELQ FMTRSSKH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489844.10.0PREDICTED: transcription factor TCP9
RefseqXP_016695435.10.0PREDICTED: transcription factor TCP9
SwissprotO646475e-96TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0D2SH070.0A0A0D2SH07_GOSRA; Uncharacterized protein
STRINGGorai.007G094200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-79TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]