PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G091600.1
Common NameB456_007G091600, LOC105802602
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 187aa    MW: 20412.2 Da    PI: 8.8172
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G091600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.3e-4091091100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l
  Gorai.007G091600.1   9 PCGACKFLRRKCVKGCIFAPYFDSDQgMAHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVNL 99 
                         7***********************9988*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Gorai.007G091600.1 100 QAELAYTQAR 109
                         *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1128110IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-399107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSGNNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGMAHFA AVHKVYGASN ASKMLQRIPV  60
HKRLDAVVTL CYEALARVRD PVYGCVGHLF TLQQQVVNLQ AELAYTQARL STLQRHPPSS  120
SLIGSDLMSS SNMSTHFDPP QQTSVGLSSF PNSFDQVAEN EQLQVLTREF VSRYLPGVRF  180
HPSTST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489773.11e-138PREDICTED: LOB domain-containing protein 19
SwissprotO221322e-68LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A0D2SGW61e-138A0A0D2SGW6_G
STRINGVIT_15s0048g00840.t016e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.14e-68LOB domain-containing protein 19
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]