PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G056300.2
Common NameB456_007G056300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 209aa    MW: 22375.6 Da    PI: 8.4279
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G056300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26063.84.4e-20294197
              DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                        +C++C+vlr++C+++C+l+ ++     p++q  ++ +v+k+FG++ ++++++a+pe +r+         A+ r+ +Pv+Gavg++++++++++
  Gorai.007G056300.2  2 SCNGCRVLRKGCSESCILRSCLqwianPESQGFATLFVAKFFGRAGLMSFISAVPEPQRP---------ACGRTVNPVNGAVGLLWTGNWHVC 85
                        6*************************999******************************8.........89********************** PP

              DUF260 89 qlkaelall 97
                        q+++e++l+
  Gorai.007G056300.2 86 QAAVETVLR 94
                        ***999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.486198IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-15292IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR SCLQWIANPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR  60
PACGRTVNPV NGAVGLLWTG NWHVCQAAVE TVLRGGTLRP IPELPAPTES NEASEAAGTA  120
DMWKLQETAT SLNSNCRFSS HKRRTIGELK KLQPSDLDLC LTPSFKGNRV LDNRRPGTPS  180
VISDESVTTA TCSESGFAGQ GKLLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489212.11e-149PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SZE88e-69LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0D2P3J01e-152A0A0D2P3J0_G
STRINGVIT_07s0129g00330.t012e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.15e-70LOB domain-containing protein 39
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]