PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G007500.1
Common NameB456_007G007500, LOC105801743
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 325aa    MW: 37215.3 Da    PI: 8.8024
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G007500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.1e-401072481131
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssas 83 
                         aa k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qakp+i +l+++        + s++  +++e++++s+ 
  Gorai.007G007500.1 107 AASKTDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLVQAKPEITKLMNNnnnsfgfaK-SPS--STSETEVVSGI 194
                         5889*************************************************************666665431.222..12223333333 PP

                 TCP  84 nsssg......kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                          + ++      k  +s++++k+++++++s++ la++ r kar+ra+ rt+ek++
  Gorai.007G007500.1 195 DKAAAidgnipKGTPSKKEKKERRQRKTSFRPLARDMRVKARERAKARTKEKNM 248
                         222225566667777777777777777789********************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-40109248IPR005333Transcription factor, TCP
PROSITE profilePS5136931.407110168IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.009229246IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MFPSNSNGNN NDPITYLDHS ILPLSFFHSP SSPNYNQCEL LQLDEYDYDV LWNQQQHFDD  60
DDDQFLHQTT LLTDNSVSET IVNLPDCRHN NTTTDIHQQP MPRKRPAASK TDRHSKINTA  120
NGPRDRRMRL SLDVAREFFG LQDMLGYDKA SRTVEWLLVQ AKPEITKLMN NNNNSFGFAK  180
SPSSTSETEV VSGIDKAAAI DGNIPKGTPS KKEKKERRQR KTSFRPLARD MRVKARERAK  240
ARTKEKNMSL RLNNETRDND PNRFSSSWSS TWTKQPGIQN HHNNNNTVFQ ADNINIHGDR  300
MIWSLNCLQN TGLINQELTG SILW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6229380.0JX622938.1 Gossypium hirsutum clone NBRI_GE69896 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488460.10.0PREDICTED: transcription factor TCP18-like isoform X1
TrEMBLA0A0D2T6X20.0A0A0D2T6X2_GOSRA; Uncharacterized protein
STRINGGorai.007G007500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-30TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]