PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G267800.1
Common NameB456_006G267800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 140aa    MW: 16746.3 Da    PI: 7.5507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G267800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.81.7e-093681245
                 NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePw 45
                        p+GfrF Pt eelv++yL kkv g++l+++++  ++e++ y++ P 
  Gorai.006G267800.1 36 PVGFRFLPTPEELVKQYLIKKVLGNPLPVSDFleVEEAEFYTTPPM 81
                        79************************99877645888899999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-1533130IPR003441NAC domain
PfamPF023656.7E-1236126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MAMVEVEKNY EDVHQNWGHR IPVEEDYCHD WHNQPPVGFR FLPTPEELVK QYLIKKVLGN  60
PLPVSDFLEV EEAEFYTTPP MSCGSWKLRK TREIFDTMGN KIAFKFCFVY YSKLGKTHWR  120
IDEFRLPAEF YKYFKVKVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483320.17e-26PREDICTED: protein FEZ-like isoform X2
TrEMBLA0A0D2T4W91e-100A0A0D2T4W9_GOSRA; Uncharacterized protein
STRINGGorai.006G267800.11e-101(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3683522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-08NAC domain containing protein 19
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]