PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G197000.1
Common NameB456_006G197000, LOC105800108
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 338aa    MW: 36419.8 Da    PI: 7.118
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G197000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.41.8e-36851844108
                 TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 
                          k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++      + + + ++s+ +++ 
  Gorai.006G197000.1  85 PKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV----NGTLKIPTSSGKQEG 171
                         5899**********************************************************9999955521....111111111122222 PP

                 TCP  94 aakskksqksaasal 108
                         + ++k+++++++  +
  Gorai.006G197000.1 172 ELPKKRRRRPSN--S 184
                         222222222222..2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-3089172IPR005333Transcription factor, TCP
PROSITE profilePS5136927.55989143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MECNRNQTIE EIDESINNNT AVIINEERHQ SNNTTPTFSA SDATVMDPNQ PMKEEALTDT  60
EPQELANPTL VQVVPAARTQ RSLAPKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL  120
GHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVNGTL KIPTSSGKQE GELPKKRRRR  180
PSNSEFIDVN EHQSSVSSGL APIAPMTCNS FNLNSQGLVP IWPMGTFSVL PAAPGSNQAQ  240
LWAIPATATP FFNVTGRPIS SFVSAMQPEV QDSSVGSMGS SVLPTSSSGA TSVSNGNNSS  300
NHSTTQMLRE FSLEILDKRE LQFLGRPANQ QAPCSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180PKKRRRRP
2174179KKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780912e-78JX578091.1 Gossypium hirsutum clone NBRI_GE10040 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486484.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT892e-86TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A0D2T1350.0A0A0D2T135_GOSRA; Uncharacterized protein
STRINGGorai.006G197000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-86TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]