PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G165300.1
Common NameB456_006G165300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 271aa    MW: 29631.8 Da    PI: 9.285
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G165300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.6e-35107226789
                 TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec.....eaesssssasnsssg. 88 
                         +++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++++a    +c     +       +s+++++ 
  Gorai.006G165300.1 107 TSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTTPAaheISCasgltT-------TSSPTESc 190
                         689********************************************************77776433233322111.......22111112 PP

                 TCP  89 ...................................k 89 
                                                            +
  Gorai.006G165300.1 191 qlhsvgigsgvvagmytmttpppscrldlcqpmglQ 226
                         233333555555555555555555555555555540 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-30107248IPR005333Transcription factor, TCP
PROSITE profilePS5136927.853108162IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTFMFSHDTF LVFLKKVTGN ATKKTYFARL SFTPCGVASI PRRSSTLSFL YAFLIKNLNL  60
FLSFAMSSEM AFHKFSATSN RTNSNLNSSL AGESTPKTQL RKPIPLTSKD RHTKVNGRGR  120
RVRMPALCAA RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTTPA AHEISCASGL  180
TTTSSPTESC QLHSVGIGSG VVAGMYTMTT PPPSCRLDLC QPMGLQYSTV GRNGYQHMPF  240
TALLLQPTAA AEEEEQQAGK EEEEEKRHQE *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485940.11e-151PREDICTED: transcription factor TCP11
SwissprotQ9SJK74e-45TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A0D2QBD50.0A0A0D2QBD5_GOSRA; Uncharacterized protein
STRINGGorai.006G165300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.11e-46TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]