PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G159000.3
Common NameB456_006G159000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 466aa    MW: 53013.9 Da    PI: 6.4386
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G159000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.91.6e-2499200186
            trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                         +Wt+++v++Li a+ +++++ +++                +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ ++++
  Gorai.006G159000.3  99 KWTDSMVRLLIMAVYYIGDEGGSEGngsdptakkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKV 189
                         7**************9999998643366788889999999**********************************************55*** PP

            trihelix  76 sstcpyfdqle 86 
                         +++ +++d+++
  Gorai.006G159000.3 190 VENQSLLDSMD 200
                         ********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-2297225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLGLEMPLHP QHHQHQQPPR NPQTAPNLHH LQQNPQMVGF PHQETDHSLH QQSVKQGGYP  60
FGSKAKQTSP LSDEDEHGFN PDDASADAKR KGSPWQRMKW TDSMVRLLIM AVYYIGDEGG  120
SEGNGSDPTA KKKAGGLLQK KGKWKSVSRA MMEKGFYVSP QQCEDKFNDL NKRYKRVNDI  180
LGRGTACKVV ENQSLLDSMD LSPKMKEEVK KLLNSKHLFF REMCAYHNSC GHVATAGAHQ  240
SSVVATEISQ TQHQQAQCLH SSENAQIAGR IETEASKLAK VGSEEEDDDE DEDDEDEDDD  300
EDDDDEAVDG HSRGQNGHGK EDDEDNNEKP SHKRPRKGAF SMSPSPLMQQ LSCEVVNVIQ  360
DGSKSAWEKK HWMKMRLVQL EEQQVSYQYQ AFQLEKQRLK WVKFSGKKER EMERAKLENE  420
RRRLENERMV LLVKQKELEL VDVQQQHLSQ QHSCSKRRDP SNISG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691470.10.0PREDICTED: myb-like protein V
RefseqXP_016691471.10.0PREDICTED: myb-like protein V
TrEMBLA0A1U8JMG30.0A0A1U8JMG3_GOSHI; myb-like protein V
STRINGGorai.006G159000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.17e-72sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]