PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G159000.1
Common NameB456_006G159000, LOC105799716
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 483aa    MW: 54496.5 Da    PI: 6.3641
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G159000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.81.7e-24116217186
            trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                         +Wt+++v++Li a+ +++++ +++                +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ ++++
  Gorai.006G159000.1 116 KWTDSMVRLLIMAVYYIGDEGGSEGngsdptakkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKV 206
                         7**************9999998643366788889999999**********************************************55*** PP

            trihelix  76 sstcpyfdqle 86 
                         +++ +++d+++
  Gorai.006G159000.1 207 VENQSLLDSMD 217
                         ********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-22114242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDSSGVSGGV FSGIGSGMLG LEMPLHPQHH QHQQPPRNPQ TAPNLHHLQQ NPQMVGFPHQ  60
ETDHSLHQQS VKQGGYPFGS KAKQTSPLSD EDEHGFNPDD ASADAKRKGS PWQRMKWTDS  120
MVRLLIMAVY YIGDEGGSEG NGSDPTAKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC  180
EDKFNDLNKR YKRVNDILGR GTACKVVENQ SLLDSMDLSP KMKEEVKKLL NSKHLFFREM  240
CAYHNSCGHV ATAGAHQSSV VATEISQTQH QQAQCLHSSE NAQIAGRIET EASKLAKVGS  300
EEEDDDEDED DEDEDDDEDD DDEAVDGHSR GQNGHGKEDD EDNNEKPSHK RPRKGAFSMS  360
PSPLMQQLSC EVVNVIQDGS KSAWEKKHWM KMRLVQLEEQ QVSYQYQAFQ LEKQRLKWVK  420
FSGKKEREME RAKLENERRR LENERMVLLV KQKELELVDV QQQHLSQQHS CSKRRDPSNI  480
SG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485858.10.0PREDICTED: myb-like protein V
RefseqXP_012485859.10.0PREDICTED: myb-like protein V
TrEMBLA0A0D2S4520.0A0A0D2S452_GOSRA; Uncharacterized protein
STRINGGorai.006G159000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.19e-72sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]