PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G152400.1
Common NameB456_006G152400, LOC105799647
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 281aa    MW: 31374.7 Da    PI: 6.8418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G152400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.11.1e-3040142199
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k ltpsdv+k++rlv+pk++ae++     + +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F +++
  Gorai.006G152400.1  40 FEKPLTPSDVGKLNRLVIPKQHAEKYfplaaD-SVDKGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSKYVKEKQLDAGDIILFLRHR 129
                         99***************************963.3457789************************************************877 PP

                         SSEE..EEEEE-S CS
                  B3  87 rsefelvvkvfrk 99 
                         +++ +++++ +r+
  Gorai.006G152400.1 130 SDGDRFFIGCRRR 142
                         6777778888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4136149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-3138142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-2938141No hitNo description
PROSITE profilePS5086313.9340143IPR003340B3 DNA binding domain
PfamPF023626.3E-2840142IPR003340B3 DNA binding domain
SMARTSM010194.3E-2540142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFFSSNHPSL SFNFNQHEDH SESEINPNQI HPDHGMEPMF EKPLTPSDVG KLNRLVIPKQ  60
HAEKYFPLAA DSVDKGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSK YVKEKQLDAG  120
DIILFLRHRS DGDRFFIGCR RRGAPSAPAD AGNTLMGNST SCGGGGDTRG LYHGHPYLGH  180
IQGYAANLPY RPGCLHAGSI VENEGIAAGN PRRLVRLFGV NLECQLDGSE PSTPENSSSV  240
SVSSQQGPTT HQFYNSQSYT SNYMDITFSR DMNQMRNHQE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-443714211117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485771.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-71Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0D2S3S00.0A0A0D2S3S0_G
STRINGVIT_08s0007g02810.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.27e-67B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]