PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G111800.1
Common NameB456_006G111800, LOC105799216
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 486aa    MW: 54096.8 Da    PI: 7.1097
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G111800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10181222445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.006G111800.1 181 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 222
                         6889*************************9777777666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-8178245IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186180224IPR004827Basic-leucine zipper domain
PfamPF001707.4E-8181223IPR004827Basic-leucine zipper domain
CDDcd147082.06E-22182234No hitNo description
SuperFamilySSF579595.79E-7182224No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-7183226No hitNo description
PROSITE patternPS000360185200IPR004827Basic-leucine zipper domain
PfamPF141443.4E-32263338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MANHRVGETG LTDSGPSSNH HHHHNIPYAV LHGMNVPPSF MHQEGSAFDF GELEEAIVLQ  60
GVKIRNDEAK PPLFTAGRPA ATLEMFPSWP MRFQQTPRGS SKSGEESTDS GSGVNTISSK  120
TENQVEPESP ISKKTSSLDQ QQQVEMASDI SRTGTSQNQS AAAKTPQEKR RGSTSEKQLD  180
AKTLRRLAQN REAARKSRLR KKAYVQQLES SRIKLTQLEQ DLQRARSQGF FLGGCAGTVG  240
NISSGAAIFD MEYSRWLEDD QRHMSELRTG LNAHLSDSDL RIIVDSYISH YDEIFRLKVA  300
AAKADVFHLI TGMWTTPAER CFLWMGGFRP SDLIKMLISQ LDPLTEQQVM GIYSLQHSSQ  360
QAEEALTQGL EQLQQSLTDT IAGGPVIDGM QQMAVALGKL ANLEGFVRQA DNLRQQTLHQ  420
LSRILTVRQA ARCFLMIGEY YGRLRALSSL WASRPRESMM SEDHSCQTTT ELQMVQPSQN  480
HFSNF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5872281e-117JX587228.1 Gossypium hirsutum clone NBRI_GE21262 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485104.10.0PREDICTED: transcription factor TGA2-like
SwissprotO241601e-135TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0D2SVM80.0A0A0D2SVM8_G
STRINGPOPTR_0009s16590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]