PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G061200.1
Common NameB456_006G061200, LOC105798678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 240aa    MW: 25550.3 Da    PI: 8.6828
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G061200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.12.3e-274107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+++p++     +++q++++ +++k++G++ +++l+ a p++ r+ +++sl+yeA+ r+ dP +G+vg++ +++++
  Gorai.006G061200.1   4 SCNGCRVLRKGCTESCTIRPCLqwipnAQSQANATLFLAKFYGRAGLINLIGAGPQNLRPGVFKSLLYEACGRIVDPAHGSVGLMCSGNWH 94 
                         6*********************9996656779*********************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l++++++++l ++
  Gorai.006G061200.1  95 LCEAAVDAVLNGS 107
                         *****99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5483109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTESCT IRPCLQWIPN AQSQANATLF LAKFYGRAGL INLIGAGPQN  60
LRPGVFKSLL YEACGRIVDP AHGSVGLMCS GNWHLCEAAV DAVLNGSPIK QVPSELSASK  120
CPQLKSSFDI RHVSKDKKSD DGLRKVKSQG RFKRSASKPK PKLEEVVFEP VSKGGDSWEG  180
ECLSVETVEG SLAKGDELGN GSDLELELTL GLEPRTKKRG NNVKGGGDAT CGGRVEGLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484293.11e-175PREDICTED: LOB domain-containing protein 40-like isoform X2
SwissprotQ9CA302e-66LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0D2SSS61e-175A0A0D2SSS6_G
STRINGVIT_17s0000g03720.t013e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-67LOB domain-containing protein 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]