PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G054500.1
Common NameB456_006G054500, LOC105797851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 163aa    MW: 18556.8 Da    PI: 9.4604
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G054500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1414.2e-1380134559
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                         ++ rr+++NR +ArrsR RK+  +e+L+++vk+L+ +N++L ++l++l+++   l
  Gorai.006G054500.1  80 RKLRRMISNRASARRSRMRKRNHLENLTNEVKQLQIQNQELNNRLKSLSDLNHCL 134
                         6789********************************************9987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-1371135No hitNo description
SMARTSM003387.3E-1276140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.02478129IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.05E-1280134No hitNo description
PfamPF001701.1E-1180135IPR004827Basic-leucine zipper domain
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MFSTVSATFS PDSMLDNDPI PDIETNIMKW DWSELFSPSQ STGSARSSGT GSDEAKQSLT  60
GGSTSSLKDP NQRVPTIDER KLRRMISNRA SARRSRMRKR NHLENLTNEV KQLQIQNQEL  120
NNRLKSLSDL NHCLRIDNNR VRFECSILQQ EVLDMRQLLV FT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483207.11e-116PREDICTED: light-inducible protein CPRF2-like
TrEMBLA0A0D2RXJ51e-116A0A0D2RXJ5_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2241735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-14basic leucine-zipper 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]